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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18795383_18796259_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18795383 - 18796259
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAAATTAAAA
Flanking Amino Acid:
EEKTLSKYESSEIRLVEIIE
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.8
73.2
31.7
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
49.3
-0
1.9
65.42
39.6

Associated Gene:

Gene:
CRELD2
Ensembl Gene ID:
ENSAPLG00000015891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016582
18793708 - 18805169
11462