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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18798484_18799504_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18798484 - 18799504
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTTTTTAAAA
Flanking Amino Acid:
PAGTYGPDCLACRGGSERPC
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.5
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
70
0.45
1
67.7
37.8
Minor 5ss
46.3
-0.4
2.8
64.2
42.3
Minor BPS
67.4
0.54
1.3
71.85
33.4

Associated Gene:

Gene:
CRELD2
Ensembl Gene ID:
ENSAPLG00000015891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016582
18793708 - 18805169
11462