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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18802369_18802625_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18802369 - 18802625
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCTTTT
5'SS Class:
weak_major
3'SS Sequence:
ATATTTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATGTTTAAAA
Flanking Amino Acid:
LNTEGSFSCKACHASCVGCT
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
72.6
39.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.9
0.67
0.8
78.6
35.1
Minor 5ss
64.5
0.49
1.9
76.7
38.4
Minor BPS
61
0.34
1.8
73.34
38.4

Associated Gene:

Gene:
CRELD2
Ensembl Gene ID:
ENSAPLG00000015891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016582
18793708 - 18805169
11462