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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18802722_18803591_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18802722 - 18803591
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGGA
5'SS Class:
major
3'SS Sequence:
TTCCTGTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TACCAGTGGACT
Flanking Amino Acid:
GYMKEDEKCTDIDECNLPEK
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
64.5
41.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
77
0.61
0.8
69.4
36.9
Minor 5ss
27
-2.6
3.1
32.5
42.2
Minor BPS
41.6
-0.5
2.3
59.49
43.4

Associated Gene:

Gene:
CRELD2
Ensembl Gene ID:
ENSAPLG00000015891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016582
18793708 - 18805169
11462