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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_188289803_188294148_R

Intron Information:

Intron Rank:
132882
Intron Class:
major
Intron Phase:
Intron Coordinates:
188289803 - 188294148
Intron Length:
4346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77
0.61
0.9
73.3
35.4
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
68.1
0.65
1.6
84.94
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044327
188280353 - 188294349
13997
ENSAPLT00000023192
188288665 - 188294349
5685