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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18872512_18874337_R

Intron Information:

Intron Rank:
134689
Intron Class:
major
Intron Phase:
Intron Coordinates:
18872512 - 18874337
Intron Length:
1826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ATTGTCCAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
68
0.45
1
57.8
39
Major PPT
77.5
0.62
0.9
68.5
42.1
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
44.7
-0.5
2
53.43
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019790
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048125
18845035 - 18875315
30281