About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189299423_189305079_R

Intron Information:

Intron Rank:
150712
Intron Class:
major
Intron Phase:
Intron Coordinates:
189299423 - 189305079
Intron Length:
5657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TGTGACAGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
69.2
36.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
89.6
0.89
0.7
87.9
29.4
Minor 5ss
33
-1.9
3
37.5
42.3
Minor BPS
45.2
-0.3
1.9
59.29
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039753
189299252 - 189307450
8199