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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189671614_189674547_R

Intron Information:

Intron Rank:
129620
Intron Class:
major
Intron Phase:
Intron Coordinates:
189671614 - 189674547
Intron Length:
2934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATACATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
91.5
0.93
0.6
86.8
24
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
60.9
0.42
1.4
73.92
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033423
189671488 - 189684320
12833