About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189674093_189674547_R

Intron Information:

Intron Rank:
129617
Intron Class:
major
Intron Phase:
Intron Coordinates:
189674093 - 189674547
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
52.6
-0
1.9
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031777
189674035 - 189684320
10286