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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189697039_189699741_F

Intron Information:

Intron Rank:
133178
Intron Class:
major
Intron Phase:
Intron Coordinates:
189697039 - 189699741
Intron Length:
2703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TTATTCATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTCATCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.1
0.65
0.9
73.6
35.4
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
54.2
0.13
2
72.79
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026928
189696819 - 189703318
6500