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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189699868_189702595_F

Intron Information:

Intron Rank:
133179
Intron Class:
major
Intron Phase:
Intron Coordinates:
189699868 - 189702595
Intron Length:
2728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTACGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AAATCCTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
71.7
0.49
0.9
64.5
36.5
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
56.5
0.28
1.9
72.54
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026928
189696819 - 189703318
6500