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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189982027_189982203_R

Intron Information:

Intron Rank:
141537
Intron Class:
major
Intron Phase:
Intron Coordinates:
189982027 - 189982203
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AATCAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
57.7
0.32
1.8
76.28
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023465
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043816
189982013 - 189988372
6360