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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_189982276_189988244_R

Intron Information:

Intron Rank:
141538
Intron Class:
major
Intron Phase:
Intron Coordinates:
189982276 - 189988244
Intron Length:
5969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.3
0.68
0.9
77.3
35.6
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
62.8
0.48
1.8
80.66
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023465
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043816
189982013 - 189988372
6360