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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1901251_1903785_R

Intron Information:

Intron Rank:
139038
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1901251 - 1903785
Intron Length:
2535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
56.8
0.15
1.1
56.3
39.2
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
75.2
0.87
1.5
89.09
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022286
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020257
1901024 - 1904645
3622