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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19031685_19057821_F

Intron Information:

Intron Rank:
125751
Intron Class:
major
Intron Phase:
Intron Coordinates:
19031685 - 19057821
Intron Length:
26137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTACATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTACATTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
68.9
0.43
0.9
62.4
38.1
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
49.7
-0
2
67.83
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017733
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043586
19031319 - 19060455
29137