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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19035311_19057050_R

Intron Information:

Intron Rank:
138184
Intron Class:
major
Intron Phase:
Intron Coordinates:
19035311 - 19057050
Intron Length:
21740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024822
19032048 - 19057840
25793