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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_190728811_190738866_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
190728811 - 190738866
Intron Length:
10056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGAG
5'SS Class:
major
3'SS Sequence:
GTTTTTGCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATACTTACTT
Flanking Amino Acid:
KTKGPLHTRQN*
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
65.6
40.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.4
0.64
0.9
73.2
37.4
Minor 5ss
35
-1.7
3.4
45.9
49.3
Minor BPS
53.9
0.2
1.8
69.72
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001157
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001139
190728805 - 190742036
13232