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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191036554_191038239_R

Intron Information:

Intron Rank:
142512
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
191036554 - 191038239
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAATTCA
5'SS Class:
major
3'SS Sequence:
CTAATTTGCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
GACTGCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
68.8
31.4
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
57.7
0.17
1.2
58.7
40.8
Minor 5ss
34.5
-1.8
2.9
38.3
41.8
Minor BPS
48.6
-0
2.1
66.53
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044630
191036429 - 191040895
4467