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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191038356_191040657_R

Intron Information:

Intron Rank:
142513
Intron Class:
major
Intron Phase:
Intron Coordinates:
191038356 - 191040657
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCATCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.7
0.8
0.8
80.5
31.4
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
52.4
0.15
1.8
76.36
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044630
191036429 - 191040895
4467