About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191043249_191048438_F

Intron Information:

Intron Rank:
148386
Intron Class:
major
Intron Phase:
Intron Coordinates:
191043249 - 191048438
Intron Length:
5190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTAAA
5'SS Class:
major
3'SS Sequence:
ATTCTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
ACATCTGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72
34.7
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
79
0.65
0.8
73.1
31.1
Minor 5ss
28.3
-2.5
2.8
29
38.4
Minor BPS
51.3
0.12
2
69.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032725
191043105 - 191053776
10672