Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19107773_19108200_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19107773 - 19108200

Intron Length:

428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAATGAGA

5'SS Class:

major

3'SS Sequence:

TTGCTCCCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATTAT

U12 Branch Point Sequence:

ATTATAGGAATT

Flanking Amino Acid:

LDTDVSSTSSNPVLEEAAPM

Intron Amino Acid Position:

465

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

65.3

40.4

Major BPS

72.1

0.55

1.1

62.3

43.7

Major PPT

76.8

0.6

0.8

74.7

30.6

Minor 5ss

33.4

-1.9

3.1

39.9

40.1

Minor BPS

42.6

-0.4

2.2

64.88

39.6

Associated Gene:

Gene:

PIM3

Ensembl Gene ID:

ENSAPLG00000016454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028527

19107711 - 19112104

4394