About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19108369_19108551_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19108369 - 19108551
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATCT
Flanking Amino Acid:
RLYFRRRISPECQQLIKWCL
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.5
0.73
0.9
80.5
37
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
68
0.64
1.7
88.57
36.2

Associated Gene:

Gene:
PIM3
Ensembl Gene ID:
ENSAPLG00000016454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028527
19107711 - 19112104
4394