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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19108729_19109989_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19108729 - 19109989
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
TTCCTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TAATCCTTTACT
Flanking Amino Acid:
LKDTVYTDFDGTRVYSPPEW
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
38.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
79.1
0.66
0.8
77.1
31.7
Minor 5ss
33
-1.9
3.3
41.5
40.3
Minor BPS
74.9
0.87
1.6
86.37
39.1

Associated Gene:

Gene:
PIM3
Ensembl Gene ID:
ENSAPLG00000016454
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028527
19107711 - 19112104
4394