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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191415543_191417337_R

Intron Information:

Intron Rank:
151702
Intron Class:
major
Intron Phase:
Intron Coordinates:
191415543 - 191417337
Intron Length:
1795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ACAGGCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
81.8
31.1
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
32.4
-2
2.4
35.7
40.3
Minor BPS
46.1
-0.2
2.2
62.51
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029169
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022777
191415262 - 191428442
13181