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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191821964_191823012_R

Intron Information:

Intron Rank:
154029
Intron Class:
major
Intron Phase:
Intron Coordinates:
191821964 - 191823012
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTACA
5'SS Class:
major
3'SS Sequence:
TATTGCCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTCTTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
76.7
33.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
71.9
0.49
1
63.8
42.4
Minor 5ss
36.1
-1.6
2.6
43.5
43.6
Minor BPS
63.2
0.49
1.6
79.74
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030361
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034329
191821689 - 191824050
2362