About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191823093_191832727_R

Intron Information:

Intron Rank:
154030
Intron Class:
major
Intron Phase:
Intron Coordinates:
191823093 - 191832727
Intron Length:
9635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.1
0.54
0.9
65.2
41.2
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
48.9
-0
2.5
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030361
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035569
191822619 - 191833368
10750