Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19182358_19184275_R

Intron Information:

Intron Rank:

132162

Intron Class:

major

Intron Phase:

Intron Coordinates:

19182358 - 19184275

Intron Length:

1918

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

GATTTTTAACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

34.8

Major BPS

87.3

0.93

0.8

36.5

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

37.5

-1.4

2.8

41.7

Minor BPS

47.4

-0.1

1.8

64.57

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035797

19182325 - 19193854

11530

ENSAPLT00000018035

19182325 - 19192173

9849