About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191898311_191907405_F

Intron Information:

Intron Rank:
129951
Intron Class:
major
Intron Phase:
Intron Coordinates:
191898311 - 191907405
Intron Length:
9095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCTTACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
72.4
0.78
1.6
86.49
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019926
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021517
191890933 - 191911309
20377