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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191952457_191958667_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
191952457 - 191958667
Intron Length:
6211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACGCTATTAATT
Flanking Amino Acid:
MTFTGMKFLEDCPV
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
78
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81
0.7
0.9
78.5
35.1
Minor 5ss
33.6
-1.9
2.9
41.7
44.7
Minor BPS
51.8
0.13
1.6
64.34
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048097
191952444 - 191961226
8783