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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191958751_191960863_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
191958751 - 191960863
Intron Length:
2113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
CCAACGTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
ATTTACTTACTG
Flanking Amino Acid:
LVGGVIGSLKVTLLLYDSTR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
64.8
0.33
1
53.7
41.2
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
57.9
0.11
1.9
66.68
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048097
191952444 - 191961226
8783