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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191971886_191972404_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
191971886 - 191972404
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGGCG
5'SS Class:
major
3'SS Sequence:
CTGATCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GGTTCCTCACAC
Flanking Amino Acid:
WFVKGLREYTRSGYESASKH
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
53.2
43
Major BPS
79
0.72
1
69
38.9
Major PPT
61.5
0.26
1
54
41.3
Minor 5ss
34
-1.8
3.7
47.7
48
Minor BPS
48.9
-0.1
1.9
61.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038005
191971830 - 191992912
21083
ENSAPLT00000007605
191971830 - 191992978
21149