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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191972323_191972404_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
191972323 - 191972404
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGATCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GGTTCCTCACAC
Flanking Amino Acid:
EKKKKYLSCAGSGYESASKH
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
41.3
Major BPS
79
0.72
1
69
38.9
Major PPT
61.5
0.26
1
54
41.3
Minor 5ss
38.5
-1.3
3.4
48.7
47
Minor BPS
48.9
-0.1
1.9
61.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018272
191972059 - 191991028
18970