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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191989561_191990828_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
191989561 - 191990828
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATCT
5'SS Class:
weak_major
3'SS Sequence:
TTCTTCTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
CAGCCCACCATC
Flanking Amino Acid:
VMHPGWADTPAVRSSMPDFY
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
67.8
38.2
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
84.2
0.77
0.7
77.7
31.2
Minor 5ss
57.8
0.26
2.4
75.1
40.8
Minor BPS
38.2
-0.9
2
42.1
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007605
191971830 - 191992978
21149
ENSAPLT00000038005
191971830 - 191992912
21083
ENSAPLT00000018272
191972059 - 191991028
18970