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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_191990967_191992784_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
191990967 - 191992784
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
ATATCCATAAGG
Flanking Amino Acid:
AKLPSGLFFQDRQPVPTHLL
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
85.1
0.79
0.8
76.9
37.4
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
54.7
0.01
2
63.95
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038005
191971830 - 191992912
21083
ENSAPLT00000007605
191971830 - 191992978
21149