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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192001034_192001722_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192001034 - 192001722
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
GTTACATCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTACATCAACA
Flanking Amino Acid:
LTSGTDKVIKLWDMTPVVS*
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
66
0.36
1
59.5
40.7
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
56
0.19
1.9
71.23
40

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853