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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192003270_192006458_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192003270 - 192006458
Intron Length:
3189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
GTTTATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGCTCATTCATT
Flanking Amino Acid:
VWNMDVERQETPEWLDSDSC
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.6
0.67
1
73.2
41.7
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
53
0.17
2
73.64
43.4

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853