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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192006565_192008429_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
192006565 - 192008429
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TGATTAGTAACT
Flanking Amino Acid:
KGTAIELQGHNDRVQSLSYA
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.6
34.7
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
88.5
0.87
0.7
80.8
36.8
Minor 5ss
41.1
-1
2.9
50.1
40.5
Minor BPS
49.7
0.06
2.2
74.56
41.8

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853