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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192008557_192009455_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192008557 - 192009455
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTAATTAAACA
Flanking Amino Acid:
SLVTTFKGHTGGVTALCWDP
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
82.5
0.73
0.8
80
31.9
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
50.3
0
1.9
65.82
40.4

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853