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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192009569_192011396_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
192009569 - 192011396
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTTATCCATCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TGTTCCTCAGCA
Flanking Amino Acid:
YRTSAGACGLQFDVETRHVF
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
71.3
0.53
1
61.3
37
Major PPT
70.2
0.45
1
67.8
37.9
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
64
0.44
1.8
77.02
39.6

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853