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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192011548_192014012_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192011548 - 192014012
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTAATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
GTCTGCTTAATT
Flanking Amino Acid:
NKMTLVKSYQAHQSRVIMIL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69
41.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
77.9
0.63
0.9
73.7
40.5
Minor 5ss
34.2
-1.8
3.2
41.7
44.2
Minor BPS
67.4
0.62
1.8
80.32
42.1

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853