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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192014068_192019638_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192014068 - 192019638
Intron Length:
5571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAC
U12 Branch Point Sequence:
TTTCTCTTCCTT
Flanking Amino Acid:
SIGLDNGTISEFILSEDYNK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
48.2
-0.1
1.4
57.7
39
Major PPT
86.9
0.83
0.6
84.9
22.7
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
42.8
-0.4
3.5
76.4
40.9

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853