About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192019713_192024690_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192019713 - 192024690
Intron Length:
4978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTTTGTTAACT
Flanking Amino Acid:
YWPSIYHAMPSPCSCMSFNP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89.3
0.88
0.7
88.1
28.9
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
69.1
0.68
2
88.23
36.9

Associated Gene:

Gene:
WDFY2
Ensembl Gene ID:
ENSAPLG00000007335
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007627
192000795 - 192054647
53853