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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192071856_192072145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192071856 - 192072145
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCT
5'SS Class:
major
3'SS Sequence:
ATTTACACCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CCTTCCCCACCA
Flanking Amino Acid:
AKGAVETFMKLRARDPASRG
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
62.3
41.3
Major BPS
72.8
0.57
1
81
30.3
Major PPT
70.9
0.47
0.9
63.9
37
Minor 5ss
36.3
-1.5
3.8
56.7
47.5
Minor BPS
46
-0.3
2.1
59.96
45.8

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000022640
192071745 - 192113772
42028
ENSAPLT00000007309
192071745 - 192113772
42028