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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192098183_192099134_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192098183 - 192099134
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
GCAACCTTAACC
Flanking Amino Acid:
AITPMCEVTGGRSYCVCSPR
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
60.9
0.27
1
51.6
35
Major PPT
80.6
0.69
0.9
73.5
41.9
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
70.1
0.61
1.3
69.16
41.7

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000022640
192071745 - 192113772
42028
ENSAPLT00000007309
192071745 - 192113772
42028