About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192100256_192102961_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192100256 - 192102961
Intron Length:
2706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GACTCGTTAACA
Flanking Amino Acid:
FWPDQNSPTLPPRTSHPVVK
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.3
0.66
0.9
78.4
35.1
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
60.4
0.32
2.1
69.3
42.8

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000022640
192071745 - 192113772
42028
ENSAPLT00000007309
192071745 - 192113772
42028