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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192103115_192103245_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192103115 - 192103245
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATTTTGGATT
Flanking Amino Acid:
ERKSPQTCWQVYVSNSAKYS
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82.6
0.73
0.9
77.4
35.6
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
53.6
0.19
1.4
69.63
35.3

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000022640
192071745 - 192113772
42028
ENSAPLT00000007309
192071745 - 192113772
42028