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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192103379_192103852_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192103379 - 192103852
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
CTATAACCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTATAACC
Flanking Amino Acid:
YNYPVLLPLLDDLFKVHKAK
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63.9
0.31
1
60.7
40
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
76.8
0.82
1.5
87.36
28.9

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000022640
192071745 - 192113772
42028
ENSAPLT00000007309
192071745 - 192113772
42028