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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192104346_192105926_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192104346 - 192105926
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCAAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
ISYLKKLSQQAKIESDRVIG
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.7
0.24
1.2
63.3
40.8
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000007309
192071745 - 192113772
42028