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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192106143_192106250_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
192106143 - 192106250
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GCTGAAACCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTGTATTAATT
Flanking Amino Acid:
AGFQIALLNKDLKPQTFRNA
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
57.3
0.16
1
48.1
39.1
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
61.8
0.45
1.7
78.9
37.5

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043136
192071745 - 192110792
39048
ENSAPLT00000038452
192071770 - 192117396
45627
ENSAPLT00000007309
192071745 - 192113772
42028