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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192113408_192117215_F

Intron Information:

Intron Rank:
19
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
192113408 - 192117215
Intron Length:
3808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATCCATC
5'SS Class:
weak_minor
3'SS Sequence:
ATCTTTTGTGCAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTGTTTTCATT
Flanking Amino Acid:
EKLLYKMMRKCPQNLWYQTP
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.2
62.5
42.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.7
0.69
0.9
76.7
36.8
Minor 5ss
75.5
0.86
1.7
77.9
29.7
Minor BPS
50.4
0.09
1.8
69.97
42.5

Associated Gene:

Gene:
INTS6
Ensembl Gene ID:
ENSAPLG00000007010
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038452
192071770 - 192117396
45627